Article

Graham, Martin and Kennedy, Jessie (2007) Visual Exploration of Alternative Taxonomies through Concepts. Ecological Informatics, 2 (3). pp. 248-261. ISSN 1574-9541

Gaston, Kevin J, Charman, Kevin, Jackson, Sarah F, Armsworth, Paul R, Bonn, Aletta and Briers, Rob (2006) The ecological effectiveness of protected areas: The United Kingdom. Biological Conservation, 132 (1). pp. 76-87. ISSN 0006 3207

Gilchrist, Jason (2004) Pup escorting in the communal breeding banded mongoose: behavior, benefits and maintenance. Behavioral Ecology, 15 (6). pp. 952-960. ISSN 1465 7279

Huxham, Mark, Kimani, E and Augley, J (2004) Mangrove fish: a comparison of community structure between forested and cleared habitats. Estuarine Coastal and Shelf Science, 60 (4). pp. 637-647. ISSN 1096 0015

Briers, Rob, Gee, J H R, Cariss, H M and Geoghegan, R (2004) Inter-population dispersal of adult stoneflies detected by stable isotope enrichment. Freshwater Biology, 49 (4). pp. 425-431. ISSN 0046 5070

Tett, Paul, Gilpin, Linda, Svendsen, Harald, Erlandsson, Carina P, Larsson, Ulf, Kratzer, Susanne, Fouilland, Eric, Janzen, Carol, Lee, Jae-Young, Grenz, Christian, Newton, Alice, Ferreira, Joao Gomes, Fernandes, Teresa and Scory, Serge (2003) Eutrophication and some European waters of restricted exchange. Continental Shelf Research, 23 (17-19). pp. 1635-1671. ISSN 02784343

Woods-Ballard, A J, Parsons, E C M, Hughes, A J, Velander, Kathy, Ladle, R J and Warburton, C A (2003) The sustainability of whale-watching in Scotland. Journal of Sustainable Tourism, 11 (1). pp. 40-55. ISSN 0966-9582

Ladle, R J and Velander, Kathy (2003) Fishing behavior in a giant tailess whip spider. Journal of Arachnology, 31 (1). pp. 154-156. ISSN 0161-8202

Craig, Alison S, Herman, Louis M, Gabriele, Christine M and Pack, Adam A (2003) Migratory timing of humpback whales (Megaptera novaeangliae) in the central North Pacific varies with age, sex and reproductive status. Behaviour, 140 (8-9). pp. 981-1000. ISSN 1568539X

Kennedy, Jessie (2003) Supporting taxonomic names in cell and molecular biology databases. Omics: A Journal of Integrative Biology, 7 (1). pp. 13-16. ISSN 1536-2310

Bolam, Stefan G, Fernandes, Teresa and Huxham, Mark (2002) Diversity, biomass and ecosystem processes in the marine benthos. Ecological Monographs, 72 (4). pp. 599-615. ISSN 00129615

Gowen, Richard J, Hydes, D J, Mills, Dave, Stewart, B M, Brown, J, Gibson, C E, Shammon, T M, Allen, M and Malcolm, Stephen J (2002) Assessing trends in nutrient concentrations in coastal shelf seas: a case study in the Irish Sea. Estuarine Coastal and Shelf Science, 54 (6). pp. 927-939. ISSN 10960015

Curling, Simon (2002) Experimental method to quantify progressive stages of decay of wood by basidiomycete fungi. International Biodeterioration & Biodegradation, 49 (1). pp. 13-19. ISSN 0964-8305

Graham, Martin, Watson, Mark F and Kennedy, Jessie (2002) Novel visualisation techniques for working with multiple, overlapping classification hierarchies. Taxon, 51 (2). pp. 351-358. ISSN 0040-0262

Craig, Alison S, Herman, Louis M and Pack, Adam A (2002) Male mate choice and male-male competition coexist in the humpback whale (Megaptera novaeangliae). Canadian Journal of Zoology, 80 (4). pp. 745-755. ISSN 14803283

Velander, Kathy and Mocogni, Marina (2001) Agricultural and avian nutrient input into a shallow wetland, Bemersyde Moss, Roxburghshire, Scotland. The Naturalist, 126. pp. 17-26. ISSN 0028-0771

Graham, Martin, Kennedy, Jessie and Benyon, David (2000) Towards a methodology for developing visualizations. International Journal of Human-Computer Studies, 53 (5). pp. 789-807. ISSN 10715819

Pullan, Martin R, Watson, Mark F, Kennedy, Jessie, Raguenaud, Cedric and Hyam, Roger (2000) The Prometheus Taxonomic Model: a practical approach to representing multiple classification. Taxon, 49 (1). pp. 55-75. ISSN 0040-0262

Book Section

Craig, Paul, Cannon, Alan, Kennedy, Jessie and Kukla, Robert (2010) Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. In: Cooperative Design, Visualization, and Engineering. Lecture Notes in Computer Science (6240). Springer, Mallorca, Spain, pp. 199-206. ISBN 978-3642160653

Graham, Martin, Craig, Paul and Kennedy, Jessie (2008) Visualisation to Aid Biodiversity Studies through Accurate Taxonomic Reconciliation. In: Proceedings of British National Conference on Database Systems: Sharing Data, Information and Knowledge. Lecture Notes in Computer Science, 5071 . Springer-Verlag Berlin, Heidelberg, pp. 280-291. ISBN 978-3-540-70503-1

Craig, Paul and Kennedy, Jessie (2008) Concept Relationship Editor: A visual interface to support the assertion of synonymy relationships between taxonomic classifications. In: Visualization and Data Analysis 2008, Proceedings of the SPIE. Society of Photo-Optical Instrumentation Engineers, Bellingham, WA, ETATS-UNIS , San Jose, CA, pp. 680906-680912. ISBN 0277-786X

Graham, Martin, Kennedy, Jessie and Downey, Laura (2006) Visual Comparison and Exploration of Natural History Collections. In: Advanced Visual Interfaces (AVI) 2006, Proceedings of the International Working Conference. ACM Press, Venice, Italy, pp. 310-313. ISBN 1-59593-353-0

Kennedy, Jessie, Kukla, Robert and Paterson, Trevor (2005) Scientific names are ambiguous as identifiers for biological taxa: their context and definition are required for accurate data integration. In: Data Integration in the Life Sciences. Lecture Notes in Computer Science, 3615 . Springer-Verlag, Berlin Heidelberg, pp. 80-95. ISBN 3-540-27967-9

Paterson, Trevor and Kennedy, Jessie (2004) Approaches to Storing and Querying Structural Information in Botanical Specimen Descriptions. In: Key technologies for data management: Proceedings of the 21st Annual British National Conference on Databases (BNCOD21). British National Conference on Databases (21). Herriot-Watt University, Edinburgh, pp. 80-91. ISBN 1-904410-12-X

Raguenaud, Cedric and Kennedy, Jessie (2002) Multiple overlapping classifications: Issues and solutions. In: 14th International conference on Scientific and Statistical Database Management - SSDBM 2002. International conferences on Scientific and Statistical Database Management (14). IEEE Computer Society Press, Edinburgh, pp. 77-86. ISBN 0-7695-1632-7

Raguenaud, Cedric, Graham, Martin and Kennedy, Jessie (2001) Two approaches to representing multiple overlapping classifications: A comparison. In: Proceedings [of the] Thirteenth International Conference on Scientific and Statistical Database Management, SSDBM 2001. International Conferences on Scientific and Statistical Database Management,SSDBM. . IEEE Computer Society Press, Los Alamitos, California, USA, pp. 239-244. ISBN 0-7695-1218-6

Raguenaud, Cedric, Kennedy, Jessie and Barclay, Peter (2000) The Prometheus database for taxonomy. In: Proceedings of the 12th International Conference on Scientific and Statistical Database Management, SSDBM 2000. Conferences on Scientific and Statistical Database Management (SSDBM) (12). IEEE Computer Society Press, Los Alamitos, CA, United States; Berlin, Germany, pp. 250-252. ISBN 0-7695-0686-0

Graham, Martin, Kennedy, Jessie and Hand, Chris (2000) A comparison of set-based and graph-based visualisations of overlapping classification hierarchies. In: 5th Working Conference on Advanced Visual Interfaces (AVI 2000). Working Conference on Advanced Visual Interfaces (AVI) (5). ACM Press, New York, USA; Palermo, Italy, pp. 41-50. ISBN 1-58113-252-2

Graham, Martin, Kennedy, Jessie and Hand, Chris (1999) The challenge of visualising multiple overlapping classification. In: Proceedings [of] IEEE User Interfaces to Data Intensive Systems (UIDIS) 1999. IEEE Computer Society Press, Los Alamitos, California, USA, pp. 42-51. ISBN 0-7695-0262-8

Barclay, Peter, Fraser, Colin and Kennedy, Jessie (1993) Using a persistent system to construct a customised interface to an ecological db. In: Interfaces to Database Systems: Proceedings of the First International Workshop on Interfaces to Database Systems (IDS92), Glasgow, 1-3 July 1992. Workshops in computing . Springer-Verlag, Glasgow, pp. 225-243. ISBN 3-540-19802-4

Barclay, Peter and Kennedy, Jessie (1992) Modelling ecological data. In: Proceedings of the Sixth International Working Conference on Scientific and Statistical Database Management. Lawrence Berkeley Laboratory, Berkeley, California, USA , pp. 77-93. ISBN 1-22222-333-X

Monograph

Paterson, Trevor, Cannon, Alan, Raguenaud, Cedric, Russell, Gordon, Armstrong, Kate E, MacDonald, Sarah M, Pullan, Martin R, Watson, Mark F and Kennedy, Jessie (2003) A methodology for composing well-defined character descriptions. Technical Report. Napier University, Edinburgh.

MacDonald, Sarah M, Raguenaud, Cedric, Pullan, Martin R, Kennedy, Jessie, Russell, Gordon and Watson, Mark F (2002) The Prometheus II Description Model: an objective approach to representing taxonomic descriptions. Project Report. Napier University, Edinburgh. (Submitted)

Conference or Workshop Item

Craig, Paul and Kennedy, Jessie (2007) Concept Relationship Editor: A visual interface to support the creation of relationships between taxonomic classifications. In: InfoVis2007, Autumn 2007 , Sacramento CA. (Unpublished)

Kennedy, Jessie, Gales, Robert and Kukla, Robert (2006) Converting an existing taxonomic data resource to employ an ontology and LSIDs. In: Taxonomic Data Working Group (TDWG) 2006 , 15-22 October 2006, Missouri Botanical Garden, St Louis, Missouri, USA..

Kennedy, Jessie, Gales, Robert, Hyam, Roger, Kukla, Robert, Wieczorek, John, Hagedorn, Gregor, Döring, Markus and Vieglais, Dave (2006) Developing a core ontology for taxonomic data. In: Taxonomy Data Working Group (TDWG) 2006, 15-22 October 2006, Missouri Botanical Gardens, St. Louis, Missouri, USA.

Turner, Susan, Turner, Phil, Raguenaud, Cedric and Kennedy, Jessie (2002) Telling Tales: Narratives Of Classification And Control In The Design Of Taxonomic Software. In: Design Research Society Conference: Common Ground, September, 2002, 5-7 September 2002, Brunel University, Windsor, UK.

Barclay, Peter and Kennedy, Jessie (2000) A dual-level presentation model for developing user-interfaces. In: 5th International Working Conference on Advanced Visual Interfaces - AVI 2000, 23-26 May 2000, Palermo, Italy.