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Redeeming pedigree data with an interactive error cleaning visualisation.

Graham, Martin, Kennedy, Jessie, Paterson, Trevor and Law, Andy (2012) Redeeming pedigree data with an interactive error cleaning visualisation. In: Proceedings of Advanced Visual Interfaces 2012. ACM Press, pp. 741-744. ISBN 978-1-4503-1287-5

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Abstract/Description

We describe a visual data cleansing application for pedigree genotype data, which is used to redeem otherwise unusable pedigree data sets. Biologists and bioinformaticians dynamically and iteratively mask pieces of information from a dirty data set and graduate towards a usable cleaned version of the data, which can then be saved and used in ongoing biological analyses. Cleansing of such data is complicated over and above simple error cleaning in that change or masking of the pedigree structure may shift errors to new parts of the pedigree. Thus a branching history of data manipulations is kept to allow users to restore the data and visualisation to any of the previous states it has travelled through.

Item Type: Book Section
ISBN: 978-1-4503-1287-5
Uncontrolled Keywords: Data wrangling; data cleansing; pedigree visualization;
University Divisions/Research Centres: Edinburgh Napier University, Institute for Informatics and Digital Innovation
Dewey Decimal Subjects: 000 Computer science, information & general works > 000 Computer science, knowledge & systems > 004 Data processing & computer science
Library of Congress Subjects: Q Science > QA Mathematics > QA75 Electronic computers. Computer science
Item ID: 5524
Depositing User: Computing Research
Date Deposited: 26 Jun 2012 13:14
Last Modified: 18 Oct 2013 14:49
URI: http://researchrepository.napier.ac.uk/id/eprint/5524

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